# PROTEINS : identifier and alignment statistics NOTATION : RELENT: relative entropy, i.e. NOTATION : ENTROPY: entropy measure of sequence variability at this position NOTATION : NINS: number of sequences with an insertion in the test protein at this position NOTATION : NDEL: number of sequences with a deletion in the test protein at this position NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence) NOTATION : acid/amide form in proportion to their database frequencies NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. NOTATION : dots (.) in the alignend sequence indicate points of deletion in this sequence

NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983) NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary NOTATION : PROTEIN: one-line description of aligned protein NOTATION : ACCNUM: SwissProt accession number NOTATION : LSEQ2: length of the entire sequence of the aligned protein NOTATION : LGAP: total length of all insertions and deletions NOTATION : NGAP: number of insertions and deletions in the alignment NOTATION : LALI: length of the alignment excluding insertions and deletions NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein

NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment NOTATION : %IDE: percentage of residue identity of the alignment NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein KCHAIN 1 chain(s) used here chains(s) : A SOURCE MOL_ID: 1 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES ORGANISM_TAXIDĪUTHOR J.JIANG,T.MIN,J.GORMAN,L.SHAPIRO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTĭBREF 2ESR A 13 179 GB 50914635 YP_060607 13 179ĭBREF 2ESR B 13 179 GB 50914635 YP_060607 13 179 HekkelmanĬOMPND MOL_ID: 1 MOLECULE: METHYLTRANSFERASE CHAIN: A, B EC: 2.1.1.- ENGI

Proteins, 9:56-68 (1991).ĬONTACT Maintained at by Maarten L. : Database of homology-derived protein structures.

HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS, VERSION 2.0 2011 Complet list of 2esr hssp file Complet list of 2esr hssp file Complete list of 2esr.hssp file

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